Tuesday, November 19, 2019
Time | Event | |
13:00 - 14:00 | Welcome - Registration- Lunch Box - Welcome - Registration- Lunch Box | |
14:00 - 14:00 | Welcome | |
14:00 - 14:30 | Focus Nice | |
14:00 - 14:30 | › Plateforme UCAGenomix - Pascal Barbry, Institut de pharmacologie moléculaire et cellulaire | |
14:30 - 15:10 | supplier | |
14:30 - 15:10 | › From extraction to bioinformatic analysis, bring out the best of your Oxford Nanopore sequences - Angelica Vittori, Oxford Nanopore | |
15:10 - 15:50 | Focus Nice | |
15:10 - 15:30 | › From single references to population-level reference quality genomes - Gianni Liti, Université Nice Sophia Antipolis [UNS] : EA3159 | |
15:30 - 15:50 | › Jellyfish genomics - Richard Copley, Université Nice Sophia Antipolis | |
15:50 - 16:20 | Coffee break | |
16:20 - 18:00 | Focus Nice | |
16:20 - 16:40 | › Assembling genomes of Meloidogyne species using long-reads from Oxford Nanopore - Georgios Koutsovoulos - Institut Sophia Agrobiotech [Sophia Antipolis] | |
16:40 - 17:00 | › Long-read targeted sequencing for DNA methylation studies - Arpita Sarkar, Institute for Research on Cancer and Aging, Nice | |
17:00 - 17:20 | › CLIP-seq analysis for small RNA biology - Michele Trabucchi, Université Nice Sophia Antipolis | |
17:20 - 17:40 | › Statistical learning for imaging-genetics analysis in Alzheimer's disease - Marco Lorenzi, Inria Sophia Antipolis - Méditerranée | |
17:40 - 18:00 | › The Human Cell Atlas - Pascal Barbry, Institut de pharmacologie moléculaire et cellulaire | |
18:30 - 18:30 | hotel registration - hotel registration | |
19:30 - 19:30 | departure for diner - departure for diner | |
20:00 - 20:00 | Diner - Diner |
Wednesday, November 20, 2019
Time | Event | |
09:10 - 09:10 | start - start | |
09:10 - 09:30 | Genome conformation | |
09:10 - 09:30 | › Identification of nuclear body-associated genomic regions using HRS-seq - Laurent Journot, Institut de Génomique Fonctionnelle, MGX-Montpellier GenomiX | |
09:30 - 11:00 | Techolonologies | |
09:30 - 09:50 | › Chromosome level assemblies using Hi-C data - Karine Labadie, Genoscope | |
09:50 - 10:10 | › Analyse de données mRNA&miRNA obtenues avec le kit combo seq - Sébastien Nin, TGML | |
10:10 - 10:40 | › La plateforme MGI - Denis Milan, Directeur Scientifique GeT | |
10:40 - 11:10 | Coffee break | |
11:10 - 13:10 | Long read | |
11:10 - 11:30 | › Un retour sur le user meeting de 10x genomix - Lisa Bargier, TGML | |
11:30 - 11:50 | › Un retour sur le user meeting de Pac Bio - Juliana Pipoli da Fonseca, Plateforme technologique Biomics - thomas cokelaer, Institut Pasteur – Hub Bioinformatique et Biostatistique – C3BI, USR 3756 IP CNRS | |
11:50 - 12:10 | › Applications sur Pac bio à Curie - Sonia LAMEIRAS, Institut Curie | |
12:10 - 12:30 | › Sequel 2 et les premiers resultats de Gentyane - Charles Poncet, Gentyane | |
12:30 - 13:30 | Lunch | |
13:30 - 15:30 | Long read | |
13:30 - 14:30 | › Les bonnes pratiques du "long reads" sur promethION - Kevin Lebrigand, IPMC - Stéfan Engelen, Genoscope - Centre national de séquençage [Evry] - Roxane Boyer, GeT PlaGe, Genotoul | |
14:30 - 14:50 | › State of the art of ONT primary analysis on the IBENS Genomics core facility - Charlotte Berthelier, École normale supérieure - Paris - Laurent JOURDREN, Institut de biologie de l'école normale supérieure - Sophie Lemoine, Institut de biologie de l'école normale supérieure | |
14:50 - 15:10 | › Outil de monitoring des runs PromethION - Stéfan Engelen, Genoscope - Centre national de séquençage [Evry] | |
15:10 - 15:30 | › Assemblage de génomes et RNA-Seq - Jean-Marc Aury, Genoscope-Centre national de séquençage | |
15:30 - 15:30 | End of the meeting - End of the meeting |