Planning
Tuesday, November 19, 2019
| Time |
Event |
|
|
13:00 - 14:00
|
Welcome - Registration- Lunch Box - Welcome - Registration- Lunch Box |
|
|
14:00 - 14:00
|
Welcome |
|
|
14:00 - 14:30
|
Focus Nice |
|
|
14:00 - 14:30 |
› Plateforme UCAGenomix - Pascal Barbry, Institut de pharmacologie moléculaire et cellulaire |
|
|
14:30 - 15:10
|
supplier |
|
|
14:30 - 15:10 |
› From extraction to bioinformatic analysis, bring out the best of your Oxford Nanopore sequences - Angelica Vittori, Oxford Nanopore |
|
|
15:10 - 15:50
|
Focus Nice |
|
|
15:10 - 15:30 |
› From single references to population-level reference quality genomes - Gianni Liti, Université Nice Sophia Antipolis [UNS] : EA3159 |
|
|
15:30 - 15:50 |
› Jellyfish genomics - Richard Copley, Université Nice Sophia Antipolis |
|
|
15:50 - 16:20
|
Coffee break |
|
|
16:20 - 18:00
|
Focus Nice |
|
|
16:20 - 16:40 |
› Assembling genomes of Meloidogyne species using long-reads from Oxford Nanopore - Georgios Koutsovoulos - Institut Sophia Agrobiotech [Sophia Antipolis] |
|
|
16:40 - 17:00 |
› Long-read targeted sequencing for DNA methylation studies - Arpita Sarkar, Institute for Research on Cancer and Aging, Nice |
|
|
17:00 - 17:20 |
› CLIP-seq analysis for small RNA biology - Michele Trabucchi, Université Nice Sophia Antipolis |
|
|
17:20 - 17:40 |
› Statistical learning for imaging-genetics analysis in Alzheimer's disease - Marco Lorenzi, Inria Sophia Antipolis - Méditerranée |
|
|
17:40 - 18:00 |
› The Human Cell Atlas - Pascal Barbry, Institut de pharmacologie moléculaire et cellulaire |
|
|
18:30 - 18:30
|
hotel registration - hotel registration |
|
|
19:30 - 19:30
|
departure for diner - departure for diner |
|
|
20:00 - 20:00
|
Diner - Diner |
|
Wednesday, November 20, 2019
| Time |
Event |
|
|
09:10 - 09:10
|
start - start |
|
|
09:10 - 09:30
|
Genome conformation |
|
|
09:10 - 09:30 |
› Identification of nuclear body-associated genomic regions using HRS-seq - Laurent Journot, Institut de Génomique Fonctionnelle, MGX-Montpellier GenomiX |
|
|
09:30 - 11:00
|
Techolonologies |
|
|
09:30 - 09:50 |
› Chromosome level assemblies using Hi-C data - Karine Labadie, Genoscope |
|
|
09:50 - 10:10 |
› Analyse de données mRNA&miRNA obtenues avec le kit combo seq - Sébastien Nin, TGML |
|
|
10:10 - 10:40 |
› La plateforme MGI - Denis Milan, Directeur Scientifique GeT |
|
|
10:40 - 11:10
|
Coffee break |
|
|
11:10 - 13:10
|
Long read |
|
|
11:10 - 11:30 |
› Un retour sur le user meeting de 10x genomix - Lisa Bargier, TGML |
|
|
11:30 - 11:50 |
› Un retour sur le user meeting de Pac Bio - Juliana Pipoli da Fonseca, Plateforme technologique Biomics - thomas cokelaer, Institut Pasteur – Hub Bioinformatique et Biostatistique – C3BI, USR 3756 IP CNRS |
|
|
11:50 - 12:10 |
› Applications sur Pac bio à Curie - Sonia LAMEIRAS, Institut Curie |
|
|
12:10 - 12:30 |
› Sequel 2 et les premiers resultats de Gentyane - Charles Poncet, Gentyane |
|
|
12:30 - 13:30
|
Lunch |
|
|
13:30 - 15:30
|
Long read |
|
|
13:30 - 14:30 |
› Les bonnes pratiques du "long reads" sur promethION - Kevin Lebrigand, IPMC - Stéfan Engelen, Genoscope - Centre national de séquençage [Evry] - Roxane Boyer, GeT PlaGe, Genotoul |
|
|
14:30 - 14:50 |
› State of the art of ONT primary analysis on the IBENS Genomics core facility - Charlotte Berthelier, École normale supérieure - Paris - Laurent JOURDREN, Institut de biologie de l'école normale supérieure - Sophie Lemoine, Institut de biologie de l'école normale supérieure |
|
|
14:50 - 15:10 |
› Outil de monitoring des runs PromethION - Stéfan Engelen, Genoscope - Centre national de séquençage [Evry] |
|
|
15:10 - 15:30 |
› Assemblage de génomes et RNA-Seq - Jean-Marc Aury, Genoscope-Centre national de séquençage |
|
|
15:30 - 15:30
|
End of the meeting - End of the meeting |
|
|
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